Consensus
Tutorial
Teachers
Tutorial Topics
Home
The 16S Gene
Lab Overview
Base Calling
Alignment
Chimeras
Classification
Tree
Mutations
Taxonomies
Micro-Arrays
Sample Data
Teachers

For Teachers
Lessons For Teachers:
PowerPoint Presentation: What is Greengenes? -An Introduction-
Lesson 1: Using Greengenes & Tutorial (with Sample Data)
Lesson 2: What is Alignment? (under develpment)
Lesson 3: What is a Chimera?
Lesson 4: Which Taxonomy to Use?
Ecology Lessons:
     Is it Safe To Swim?
                  Student Lessons
                  Teacher Notes
                  Samples for Use in Analysis:
                      Sample 1
                      Sample 2
                      Sample 3
                   Appendices
                        A:  Example of Student Spreadsheet
                        B:  Environmental Ecology (2007) article - pdf
                        C:  Information on Bacteria in Samples
     Eating At Jimmy's Crab Shack: (under develpment)
     Bioremediation: Cleaning Up an Oil Spill (under develpment)
Wet Lab Protocols:
     Extraction of DNA (16S)
     PCR
     Cloning
     Sequencing

Lab Research Overview

What is the 16S rRNA gene?

Sample Data

Greengenes Main
 FASTA
file		 Align
1		 Align
2		 Align
3		 Align
4		 Align
5		 Chimera
1		 Chimera
2		 Classify Tree