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Apply your own taxonomy to the prokMSA 16S rRNA gene database
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Use this tool to apply your own taxonomy to the greengenes sequences. Please
contact us if you would like to use this feature.
Directions to prepare your tree:
NOTE: Currently, only the ARB_XML tree format is
supported.
1. Begin an ARB session.
2. Select a tree which contains all the sequences and group information.
3. Select visible info (NDS), show group_name AND (accession number OR prokMSA_id).
4. Export the tree (using Tree Admin). Select ARB_XML tree format,
Nodetype=NDS, Save branch lengths=checked, Save bootstrap values=unchecked,
Save group names=checked, Hide folded groups=unchecked. Click SAVE.
5. Resulting XML file should be approx. 1Mb for every 3000 tree leaves.
6. Compress the XML file with gzip. For example "gzip my_arb_tree.xml".
7. Resulting XML.gz file should be approx. 50Kb for every 3000 tree
leaves.
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